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Back to Whole genome sequencing of bacterial genomes - tools and applications

Learner Reviews & Feedback for Whole genome sequencing of bacterial genomes - tools and applications by Technical University of Denmark (DTU)

4.6
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1,602 ratings

About the Course

This course will cover the topic of Whole genome sequencing (WGS) of bacterial genomes which is becoming more and more relevant for the medical sector. WGS technology and applications are high on international political agenda, as the classical methods are being replaced by WGS technology and therefore bioinformatic tools are extremely important for allowing the people working in this sector to be able to analyze the data and obtain results that can be interpreted and used for different purposes. The course will give the learners a basis to understand and be acquainted with WGS applications in surveillance of bacteria including species identification, typing and characterization of antimicrobial resistance and virulence traits as well as plasmid characterization. It will also give the opportunity to learners to learn about online tools and what they can be used for through demonstrations on how to use some of these tools and exercises to be solved by learners with use of freely available WGS analysis tools . By the end of this course you should be able to: 1. Describe the general Principles in typing of Bacteria 2. Give examples of the applications of Whole Genome Sequencing to Surveillance of bacterial pathogens and antimicrobial resistance 3. Apply genomic tools for sub-typing and surveillance 4. Define the concept of Next-Generation Sequencing and describe the sequencing data from NGS 5. Describe how to do de novo assembly from raw reads to contigs 6. Enumerate the methods behind the tools for species identification, MLST typing and resistance gene detection 7. Apply the tools for species identification, MLST typing and resistance gene detection in real cases of other bacterial and pathogen genomes. 8. Describe the methods behind the tools for Salmonella and E.coli typing, plasmid replicon detection and plasmid typing 9. Utilize the tools for Salmonella and E.coli typing, plasmid replicon detection and plasmid typing in real cases of other bacterial and pathogen genomes. 10. Explain the concept and be able to use the integrated bacterial analysis pipeline for batch analysis and typing of genomic data 11. Demonstrate how to construct phylogenetic tree based on SNPs 12. Apply the phylogenetic tool to construct phylogenetic trees and explain the relatedness of bacterial or pathogen strains 13. Describe how to create your own sequence database 14. Utilize the MyDbFinder tool to detect genetic markers of interest from whole genome sequencing...

Top reviews

MB

Jun 10, 2019

Excellent course with a wealth of information about tools and applications of whole genome sequencing. Presented in a very lucid and interesting manner, very crispy and simplified course.

AP

Jul 20, 2020

Thank you very much for this course through which i learnt basic handling of bioinformatics tools and concepts of WGS. This will help me a lot while pursuing my PhD research work in my field.

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351 - 375 of 419 Reviews for Whole genome sequencing of bacterial genomes - tools and applications

By Ahmed Z K

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Jun 24, 2024

A little difficulty understanding some pronunciations but overall a good course with a lot of practical tips and information.

By Shyama D

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Sep 12, 2020

Very thorough course, easy to follow ,excellent teaching. Thank you so much for putting effort to bring this course to us.

By Ben W

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Oct 24, 2017

Very informative course. Some practical exercises don't giive alwys the expected result.

e.g. pMLST of question 9 Quiz 4

By Jorge G

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Oct 17, 2019

Un buen curso para aprender a utilizar las herramientas descritas. Gran utilidad de cara al futuro profesional.

By Marcus V F N

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Aug 6, 2025

Muito bom o curso, mas gostaria de ter vistos as an谩lises em tempo real com mais exemplos e estudo de caso.

By Matthew Y

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Mar 4, 2019

Very much enjoyed the course and the practice problems involving Whole Genome Sequencing on the CGE website

By Sawsan

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Jul 9, 2024

It is so practical course and summarized the basic tools to investigate the causative agents of outbreak

By Thripthi S

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Jun 20, 2021

A bit more explanation on CSIPhylogeny would have been appreciated. Thank you for this wonderful course!

By Frans D

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Jan 1, 2023

Very insightful course although some technical glitch is encountered due to online connection traffic.

By Abhijeet J

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Apr 10, 2020

Please add parameters in selection of pipeline for WGS raw data.

If possible also explain it with NCBI.

By Bharti M

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Jan 21, 2021

This was really a good course. I have learnt a lot from this course and able to apply to my datasets.

By Mokhtar M E

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May 29, 2020

course is good i had learned really but it will be much better when create section after each session

By Kajal K

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Aug 17, 2020

The instructor Shinny Ma'am did a wonderful job. it is one of the best courses I have done so far.

By Dyuti P

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May 24, 2020

Thank you for the wonderful course. I can clearly say that I am now one step forward to my passion

By Deboleena D

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Sep 9, 2020

It was a very nice experience learning through DTU. I want to thank all the professors very much.

By Asif H

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Jun 10, 2020

The overall course material was good. But I faced a problem with the accent of the instructors.

By Prateek B

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Sep 9, 2020

It was a nice learning experience. Thank you for this informative and interesting course.

By Sharavanakkumar S K

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Nov 30, 2020

I learned something new, which helps in identifying new tools used in bioinformatics.

By SHASHANK K S

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Jun 11, 2020

Very useful course but it will be great if tools are explained in little more detail.

By Edgar T M

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Aug 5, 2024

El curso al principio es muy te贸rico, pero a medida que avanza se hace mas practico

By Mahek B

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Jun 24, 2020

the software suggested are slightly difficult to use rest the content is good

By Eddie S L L

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Nov 6, 2020

I think this course is pretty good. It is very informational and practical.

By Sneha

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Feb 24, 2023

It was really helpful but how can i get the certificate for this course

By Mrithika S

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Jul 25, 2020

This course was very useful and simple to learn and understand.

By Ananya S

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Nov 7, 2019

VERY THOROUGH AND INFORMATIVE. EAGER TO DO THE OTHER COURSES.