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Back to Whole genome sequencing of bacterial genomes - tools and applications

Learner Reviews & Feedback for Whole genome sequencing of bacterial genomes - tools and applications by Technical University of Denmark (DTU)

4.6
stars
1,565 ratings

About the Course

This course will cover the topic of Whole genome sequencing (WGS) of bacterial genomes which is becoming more and more relevant for the medical sector. WGS technology and applications are high on international political agenda, as the classical methods are being replaced by WGS technology and therefore bioinformatic tools are extremely important for allowing the people working in this sector to be able to analyze the data and obtain results that can be interpreted and used for different purposes. The course will give the learners a basis to understand and be acquainted with WGS applications in surveillance of bacteria including species identification, typing and characterization of antimicrobial resistance and virulence traits as well as plasmid characterization. It will also give the opportunity to learners to learn about online tools and what they can be used for through demonstrations on how to use some of these tools and exercises to be solved by learners with use of freely available WGS analysis tools . By the end of this course you should be able to: 1. Describe the general Principles in typing of Bacteria 2. Give examples of the applications of Whole Genome Sequencing to Surveillance of bacterial pathogens and antimicrobial resistance 3. Apply genomic tools for sub-typing and surveillance 4. Define the concept of Next-Generation Sequencing and describe the sequencing data from NGS 5. Describe how to do de novo assembly from raw reads to contigs 6. Enumerate the methods behind the tools for species identification, MLST typing and resistance gene detection 7. Apply the tools for species identification, MLST typing and resistance gene detection in real cases of other bacterial and pathogen genomes. 8. Describe the methods behind the tools for Salmonella and E.coli typing, plasmid replicon detection and plasmid typing 9. Utilize the tools for Salmonella and E.coli typing, plasmid replicon detection and plasmid typing in real cases of other bacterial and pathogen genomes. 10. Explain the concept and be able to use the integrated bacterial analysis pipeline for batch analysis and typing of genomic data 11. Demonstrate how to construct phylogenetic tree based on SNPs 12. Apply the phylogenetic tool to construct phylogenetic trees and explain the relatedness of bacterial or pathogen strains 13. Describe how to create your own sequence database 14. Utilize the MyDbFinder tool to detect genetic markers of interest from whole genome sequencing...

Top reviews

AP

Jul 20, 2020

Thank you very much for this course through which i learnt basic handling of bioinformatics tools and concepts of WGS. This will help me a lot while pursuing my PhD research work in my field.

MB

Jun 10, 2019

Excellent course with a wealth of information about tools and applications of whole genome sequencing. Presented in a very lucid and interesting manner, very crispy and simplified course.

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226 - 250 of 411 Reviews for Whole genome sequencing of bacterial genomes - tools and applications

By Laura M

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Sep 9, 2022

Very good for starters in bioinformatics!

By Shimul D

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May 30, 2020

That was really awesome.Thanks to everyone

By Ahmed E A e

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Oct 31, 2018

It isa fantastic course to spend your time

By Kris A S

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Dec 8, 2017

Genuinly seems fun.

Keep it up Team at TUD

By Valourstar M

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Nov 15, 2017

developing skills in sequencing techniques

By Sonia R Q Q

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Sep 17, 2019

a complete an interesting course, thanks!

By Md. A A 1

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Jul 26, 2020

Its an awesome and very helpful course

By Shakil A S

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Sep 1, 2020

Too much tough but still too amazing!

By Sharma

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Nov 25, 2019

Great course. Excellent for research.

By Tavonga D Z

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Jul 4, 2022

Great hands-on course. I enjoyed it.

By Dordia R

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Jun 27, 2020

practical and clear. Really helpful!

By Deepak S

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Apr 2, 2020

Excellent course, great instructors.

By Shahrzad H A

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Oct 16, 2023

Great course and great instructors!

By Noor U

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Aug 8, 2023

Thank You so much for your efforts.

By huma a

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Jul 3, 2022

I have learnt alot from this course

By Eunice O

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Sep 26, 2020

such an excellent practical course.

By PADHYA T

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Apr 11, 2025

Good Informative and useful course

By Kannan M

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Oct 4, 2024

Very Useful, easy to understanding

By Prince M

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Oct 30, 2021

AMAZING COURSE THANK YOU VERY MUCH

By Tahir H

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Dec 24, 2019

a good experience to get knowledge

By Jenny S

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Jun 11, 2020

really helpful and awesome course

By Manaswini K

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Jun 9, 2020

very useful ,thank you so much !!

By Rafael P

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Jun 4, 2018

Great Course!, congratulations!

By Ibrahim H

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Nov 10, 2019

This lecuers exterimly useful.

By Alida O

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Sep 20, 2024

niveau de difficult茅s parfait