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Back to Whole genome sequencing of bacterial genomes - tools and applications

Learner Reviews & Feedback for Whole genome sequencing of bacterial genomes - tools and applications by Technical University of Denmark (DTU)

4.6
stars
1,565 ratings

About the Course

This course will cover the topic of Whole genome sequencing (WGS) of bacterial genomes which is becoming more and more relevant for the medical sector. WGS technology and applications are high on international political agenda, as the classical methods are being replaced by WGS technology and therefore bioinformatic tools are extremely important for allowing the people working in this sector to be able to analyze the data and obtain results that can be interpreted and used for different purposes. The course will give the learners a basis to understand and be acquainted with WGS applications in surveillance of bacteria including species identification, typing and characterization of antimicrobial resistance and virulence traits as well as plasmid characterization. It will also give the opportunity to learners to learn about online tools and what they can be used for through demonstrations on how to use some of these tools and exercises to be solved by learners with use of freely available WGS analysis tools . By the end of this course you should be able to: 1. Describe the general Principles in typing of Bacteria 2. Give examples of the applications of Whole Genome Sequencing to Surveillance of bacterial pathogens and antimicrobial resistance 3. Apply genomic tools for sub-typing and surveillance 4. Define the concept of Next-Generation Sequencing and describe the sequencing data from NGS 5. Describe how to do de novo assembly from raw reads to contigs 6. Enumerate the methods behind the tools for species identification, MLST typing and resistance gene detection 7. Apply the tools for species identification, MLST typing and resistance gene detection in real cases of other bacterial and pathogen genomes. 8. Describe the methods behind the tools for Salmonella and E.coli typing, plasmid replicon detection and plasmid typing 9. Utilize the tools for Salmonella and E.coli typing, plasmid replicon detection and plasmid typing in real cases of other bacterial and pathogen genomes. 10. Explain the concept and be able to use the integrated bacterial analysis pipeline for batch analysis and typing of genomic data 11. Demonstrate how to construct phylogenetic tree based on SNPs 12. Apply the phylogenetic tool to construct phylogenetic trees and explain the relatedness of bacterial or pathogen strains 13. Describe how to create your own sequence database 14. Utilize the MyDbFinder tool to detect genetic markers of interest from whole genome sequencing...

Top reviews

AP

Jul 20, 2020

Thank you very much for this course through which i learnt basic handling of bioinformatics tools and concepts of WGS. This will help me a lot while pursuing my PhD research work in my field.

MB

Jun 10, 2019

Excellent course with a wealth of information about tools and applications of whole genome sequencing. Presented in a very lucid and interesting manner, very crispy and simplified course.

Filter by:

251 - 275 of 411 Reviews for Whole genome sequencing of bacterial genomes - tools and applications

By Muhammad I

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Sep 8, 2024

Well explained by the tutors

By Tanvi B

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Jul 4, 2022

Very Informative and helpful

By 1806071

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Sep 8, 2019

Very very informative course

By Katarina E

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Mar 30, 2022

Very practical and useful!

By Pamela M

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Apr 22, 2021

The best course about WGS!

By Mayur M

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Jun 25, 2020

Very Clear and informative

By Alexandru B

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Mar 25, 2018

very useful. thanks a lot.

By Moayad M A

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Aug 22, 2017

very easy and interactive

By HARISH A 1

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Jun 18, 2020

i had finally learned

it

By Elhandi k

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Mar 8, 2022

wonderful cours !thanks

By Mark R

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Jul 5, 2018

简单明了，适合初学者和做细菌分型溯源的生物学家

By karima f

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Jan 25, 2025

very interested course

By Pradeep K N

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Jun 30, 2022

EXCELLENT PROJECT WORK

By Verruchi G

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Aug 15, 2020

ONE OF THE BEST COURSE

By Hanan K M H

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Jul 4, 2020

WONDERFUL >> THANK YOU

By Mónica C V R

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Feb 4, 2025

very good information

By Paola D S

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Jul 1, 2020

Useful, well planned!

By Johanna M

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Apr 25, 2020

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By Mustafa R

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Jan 7, 2018

Very good, Thanks DTU

By SRI J M

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Dec 17, 2022

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By Sonam J

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Jul 26, 2023

Excellent lectures.

By CHUKKA S K

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Dec 2, 2020

very understandable

By Rohini B

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Nov 24, 2024

Informative course

By MEER K H S

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Oct 28, 2024

Enjoyed the course

By rhudith c

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Sep 26, 2022

very informative!